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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
21
ChIP-seq
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
21
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
35
February, 2023
19
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
89
bam
81
bigWig
70
bed narrowPeak
58
tsv
21
bigBed narrowPeak
tagAlign
Organism
124
Homo sapiens
Biosample type
62
tissue
60
cell line
2
primary cell
Organ
864
pancreas
621
connective tissue
619
liver
467
epithelium
458
adipose tissue
339
heart
261
kidney
199
vasculature
196
blood vessel
159
bone element
124
artery
124
brain
69
limb
63
blood
63
bodily fluid
56
eye
44
musculature of body
30
embryo
30
nerve
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
120
GRCh38
85
hg19
Lab
124
AMP-T2D consortium
assay_title!
DNase-seq
MeRIP-seq
files.file_type!
tagAlign
target.investigated_as!
control
BIOSAMPLE
ASSAY
124 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
tibial artery
1
1
18
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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