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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
117
ChIP-seq
62
ATAC-seq
11
snATAC-seq
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
117
DNA binding
75
DNA accessibility
4
3D chromatin structure
4
DNA methylation
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
146
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
5
November, 2018
5
October, 2017
4
July, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
422
bam
366
bigWig
275
tsv
210
fastq
116
bed narrowPeak
55
bigBed narrowPeak
21
bed bed3+
16
tagAlign
14
bed broadPeak
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bedpe
Organism
489
Homo sapiens
Biosample type
496
tissue
346
primary cell
91
cell line
3
in vitro differentiated cells
Organ
545
connective tissue
496
pancreas
486
adipose tissue
356
liver
285
heart
237
brain
230
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
46
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
466
AMP
30
T1D
Genome assembly (visualization)
406
hg19
379
GRCh38
Lab
433
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
RRBS
BIOSAMPLE
ASSAY
496 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
50
58
7
6
3
4
1
body of pancreas
3
35
4
2
2
pancreas
2
16
4
1
2
1
1
endocrine pancreas
16
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