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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
134
DNA binding
43
DNA accessibility
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
February, 2020
3
May, 2021
Available data
173
bigWig
160
bam
157
bed narrowPeak
157
tsv
64
bigBed narrowPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
338
Homo sapiens
Biosample type
266
tissue
66
cell line
5
primary cell
1
in vitro differentiated cells
Organ
932
pancreas
774
liver
657
connective tissue
492
epithelium
477
adipose tissue
338
heart
236
brain
215
kidney
213
vasculature
210
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
49
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
338
AMP
Genome assembly (visualization)
215
GRCh38
144
hg19
Lab
298
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
DNase-seq
RRBS
lab.title!
KPMP
month_released!
July, 2019
BIOSAMPLE
ASSAY
338 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
tissue
left cardiac atrium
40
18
heart left ventricle
35
18
1
1
1
coronary artery
5
1
35
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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