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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
55
DNA binding
7
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
52
transcription factor
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
406
November, 2017
400
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
64
November, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
31
June, 2019
25
February, 2020
22
October, 2017
19
April, 2020
15
May, 2023
15
November, 2020
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
64
fastq
63
bam
59
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
64
Homo sapiens
Biosample type
46
cell line
17
tissue
1
primary cell
Organ
50
liver
15
blood
bodily fluid
8
spleen
5
pancreas
Project
64
AMP
Genome assembly (visualization)
58
GRCh38
50
hg19
Lab
64
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
RRBS
lab.title!
Stephen Parker, UMich
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
tissue
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
primary cell
pancreatic cell
1
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