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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
WGBS
46
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
92
DNA accessibility
73
Transcription
46
DNA binding
1
3D chromatin structure
Target of assay
51
control
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
56
February, 2023
45
May, 2022
21
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
9
October, 2019
8
January, 2021
7
August, 2020
4
August, 2021
4
July, 2018
4
September, 2017
3
March, 2020
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
98
fastq
47
bam
39
zippedFastqFolder
10
bigWig
6
txt
3
tagAlign
3
tsv
1
bed broadPeak
1
bedpe bed3+
Organism
224
Homo sapiens
Biosample type
114
primary cell
78
tissue
33
cell line
1
in vitro differentiated cells
Organ
226
pancreas
216
kidney
159
heart
155
epithelium
140
liver
89
bone element
65
blood vessel
65
vasculature
48
artery
45
connective tissue
42
brain
29
adipose tissue
25
eye
24
limb
20
lung
16
musculature of body
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
HPAP
96
AMP
28
T1D
Genome assembly (visualization)
hg19
487
GRCh38
Lab
102
Klaus Kaestner, Upenn
77
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
WGBS
assembly!
hg19
target.investigated_as!
histone
BIOSAMPLE
ASSAY
226 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
pancreatic beta cell
16
11
6
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
11
7
4
1
body of pancreas
1
9
pancreas
1
3
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
6
in vitro differentiated cells
pancreatic PP cell
1
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