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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
246
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
WGBS
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
423
Transcription
279
DNA binding
229
DNA accessibility
11
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
July, 2018
43
April, 2018
February, 2021
31
July, 2019
31
June, 2019
30
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
582
bigWig
577
bam
363
fastq
265
bed narrowPeak
263
tsv
112
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
9
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
968
Homo sapiens
Biosample type
2027
tissue
968
primary cell
563
cell line
in vitro differentiated cells
10
stem cell
Organ
341
epithelium
299
pancreas
31
vasculature
30
connective tissue
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
525
AMP
238
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
603
hg19
507
GRCh38
Lab
490
AMP-T2D consortium
239
Kyle Gaulton, UCSD
238
Klaus Kaestner, Upenn
1
ITG
Audit category:
51
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
WGBS
biosample_type!
in vitro differentiated cells
month_released!
February, 2021
BIOSAMPLE
ASSAY
968 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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