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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
18
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
18
DNA binding
4
DNA accessibility
Target of assay
18
control
Date released
386
February, 2021
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
423
bam
406
bigWig
401
tsv
25
fastq
8
bed narrowPeak
bigBed narrowPeak
1
bedpe bed3+
Organism
425
Homo sapiens
Biosample type
423
tissue
2
primary cell
1
in vitro differentiated cells
Organ
633
pancreas
534
connective tissue
426
adipose tissue
383
liver
373
epithelium
291
heart
248
kidney
159
bone element
159
brain
151
vasculature
149
blood vessel
116
artery
55
eye
37
embryo
37
limb
22
musculature of body
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
10
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
426
AMP
Genome assembly (visualization)
403
hg19
401
GRCh38
Lab
426
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNase-seq
WGBS
files.file_type!
bigBed narrowPeak
month_released!
August, 2017
BIOSAMPLE
ASSAY
426 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
1
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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