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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ChIP-seq
1
FAIRE-seq
Assay category
4
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
4
July, 2019
3
November, 2017
1
October, 2019
Available data
2488
bam
2332
bigWig
1402
bed narrowPeak
1183
tsv
871
fastq
750
bigBed narrowPeak
379
tagAlign
155
txt
102
bed broadPeak
79
bigBed broadPeak
73
zippedFastqFolder
64
xls
47
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
cell line
Organ
4
liver
3
blood vessel
3
brain
3
epithelium
3
vasculature
1
connective tissue
pancreas
1
vein
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
8
AMP-T2D consortium
assay_title!
DNase-seq
WGBS
organ_slims!
pancreas
BIOSAMPLE
ASSAY
8 results
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Hi-C
ChIP-seq
FAIRE-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
cell line
HepG2
3
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