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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
4
ATAC-seq
4
Hi-C
2
Capture-C
2
total RNA-seq
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Date released
4
February, 2023
3
July, 2019
2
August, 2021
2
May, 2021
1
May, 2022
1
October, 2019
Available data
2506
bam
2343
bigWig
1397
tsv
1172
bed narrowPeak
fastq
480
bigBed narrowPeak
312
tagAlign
161
txt
153
zippedFastqFolder
64
xls
60
bed bed3+
58
bed broadPeak
33
bed bedMethyl
33
bigBed bedMethyl
21
bigBed broadPeak
21
hic
18
bedpe bed3+
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
13
Homo sapiens
Biosample type
6
in vitro differentiated cells
5
primary cell
1
cell line
1
tissue
Organ
7
connective tissue
5
epithelium
liver
3
brain
2
blood vessel
2
vasculature
1
musculature of body
1
pancreas
Project
13
AMP
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
DNase-seq
pCHi-C
files.file_type!
fastq
organ_slims!
liver
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ATAC-seq
Hi-C
Capture-C
total RNA-seq
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cell line
Panc1
1
tissue
skeletal muscle tissue
1
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