Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
1
February, 2023
Available data
208
bam
187
bigWig
168
bed narrowPeak
118
tagAlign
92
bigBed narrowPeak
24
tsv
16
fastq
12
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
249
Homo sapiens
Biosample type
236
tissue
13
primary cell
Organ
918
pancreas
630
connective tissue
496
epithelium
470
adipose tissue
444
liver
343
heart
261
kidney
249
brain
215
vasculature
212
blood vessel
158
bone element
132
artery
86
limb
62
musculature of body
52
eye
41
nerve
34
embryo
20
vein
19
lung
18
blood
18
bodily fluid
17
spleen
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
249
AMP
Genome assembly (visualization)
182
GRCh38
139
hg19
Lab
249
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
pCHi-C
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
249 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
See all biosamples
Download