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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
11
histone
11
histone modification
10
transcription factor
7
broad histone mark
4
narrow histone mark
2
chromatin remodeller
Date released
11
December, 2017
6
August, 2017
2
February, 2018
2
November, 2017
Available data
47
bam
47
bigWig
47
fastq
45
bed narrowPeak
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
21
Homo sapiens
Biosample type
17
in vitro differentiated cells
2
cell line
2
stem cell
Organ
6
connective tissue
5
epithelium
pancreas
3
embryo
2
liver
Project
21
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
21
inconsistent control read length
assay_title!
DNase-seq
shRNA RNA-seq
files.file_type!
bigBed narrowPeak
organ_slims!
pancreas
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
2
stem cell
hESC
2
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