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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
10
ATAC-seq
DNase-seq
Assay category
392
DNA binding
10
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
13
October, 2019
12
November, 2019
1
March, 2020
1
May, 2021
Available data
580
bam
520
bigWig
427
fastq
402
bed narrowPeak
353
bigBed narrowPeak
119
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
402
Homo sapiens
Biosample type
807
tissue
402
cell line
266
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
308
liver
54
blood
54
bodily fluid
20
pancreas
14
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
7
kidney
Project
400
AMP
2
T1D
Genome assembly (visualization)
398
hg19
356
GRCh38
Lab
388
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
shRNA RNA-seq
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
ATAC-seq
cell line
HepG2
307
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
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