Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
5
total RNA-seq
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
39
DNA binding
5
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
control
Date released
46
October, 2019
1
February, 2020
1
March, 2020
Available data
45
bam
42
bigWig
36
bed narrowPeak
35
bigBed narrowPeak
5
tsv
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
48
Homo sapiens
Biosample type
30
tissue
18
primary cell
Organ
885
pancreas
677
liver
640
connective tissue
475
epithelium
465
adipose tissue
343
heart
261
kidney
223
brain
203
vasculature
200
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
57
musculature of body
56
eye
30
embryo
30
nerve
20
lung
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
44
hg19
39
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
shRNA RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
48 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
5
1
primary cell
endothelial cell of umbilical vein
15
2
1
Download