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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
100
ChIP-seq
22
ATAC-seq
DNase-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
100
DNA binding
22
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
35
August, 2021
25
August, 2017
10
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
1
February, 2020
Available data
676
bam
617
bigWig
fastq
436
bed narrowPeak
353
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
323
Homo sapiens
Biosample type
277
tissue
34
cell line
12
primary cell
Organ
576
connective tissue
470
pancreas
446
adipose tissue
363
heart
323
liver
273
kidney
248
epithelium
235
brain
219
vasculature
218
blood vessel
159
bone element
137
artery
86
limb
61
musculature of body
57
eye
41
nerve
20
lung
20
vein
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
323
AMP
Genome assembly (visualization)
233
hg19
186
GRCh38
Lab
252
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
DNase-seq
siRNA RNA-seq
files.file_type!
fastq
organ_slims!
lymph node
BIOSAMPLE
ASSAY
323 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
1
2
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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