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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
16
pCHi-C
DNase-seq
1
DNAme array
1
Hi-C
Assay category
172
DNA accessibility
95
Transcription
48
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
101
May, 2022
88
February, 2023
57
May, 2020
33
February, 2021
22
May, 2021
19
September, 2020
12
August, 2017
8
January, 2021
8
June, 2019
7
August, 2020
6
October, 2019
1
August, 2021
1
March, 2023
1
May, 2019
Available data
147
fastq
101
zippedFastqFolder
28
bam
18
tsv
10
bigWig
1
hic
1
tagAlign
Organism
364
Homo sapiens
Biosample type
831
tissue
364
primary cell
132
cell line
95
in vitro differentiated cells
7
stem cell
Organ
171
epithelium
161
pancreas
8
blood
8
bodily fluid
5
blood vessel
5
vasculature
5
vein
4
connective tissue
3
kidney
2
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
236
HPAP
103
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
409
GRCh38
Lab
236
Klaus Kaestner, Upenn
103
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
assay_title!
DNase-seq
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
364 results
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ATAC-seq
total RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNAme array
Hi-C
primary cell
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
Langerhans cell
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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