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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
single cell RNA-seq
138
ATAC-seq
135
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
165
DNA accessibility
135
Transcription
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
122
August, 2021
103
August, 2017
87
February, 2021
79
October, 2019
76
November, 2017
61
February, 2023
40
May, 2024
29
October, 2018
26
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
17
July, 2019
15
April, 2019
12
December, 2017
11
May, 2023
10
April, 2020
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
2
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
243
bam
191
bed narrowPeak
143
txt
133
tagAlign
109
bigWig
83
fastq
64
xls
55
tsv
52
bigBed narrowPeak
16
bed bedMethyl
16
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
828
Homo sapiens
Biosample type
831
tissue
364
primary cell
132
cell line
95
in vitro differentiated cells
7
stem cell
Organ
142
kidney
112
brain
105
heart
91
liver
90
pancreas
88
bone element
65
connective tissue
64
adipose tissue
57
blood vessel
57
vasculature
44
artery
26
eye
26
limb
20
musculature of body
12
nerve
11
lung
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
792
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
1676
GRCh38
hg19
Lab
589
AMP-T2D consortium
130
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
3
audit script error
Audit category:
1
missing controlled_by
assay_title!
DNase-seq
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
831 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
20
3
1
bone element
84
left cardiac atrium
40
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