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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
243
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
257
DNA accessibility
253
DNA binding
245
Transcription
57
DNA methylation
10
3D chromatin structure
Target of assay
219
histone
219
histone modification
114
broad histone mark
105
narrow histone mark
30
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
44
August, 2017
36
February, 2021
28
October, 2019
26
June, 2019
23
July, 2019
19
September, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
477
bigWig
471
bam
280
fastq
263
bed narrowPeak
166
tsv
101
zippedFastqFolder
100
tagAlign
77
bigBed narrowPeak
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
839
Homo sapiens
Biosample type
2189
tissue
839
primary cell
536
cell line
390
in vitro differentiated cells
10
stem cell
Organ
312
epithelium
272
pancreas
29
connective tissue
25
vasculature
24
kidney
23
blood vessel
18
vein
13
musculature of body
12
liver
heart
8
blood
8
bodily fluid
7
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
395
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
477
hg19
384
GRCh38
Lab
360
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
39
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
single cell RNA-seq
files.file_type!
bed broadPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
839 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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