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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
246
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA binding
257
DNA accessibility
248
Transcription
57
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
57
August, 2017
36
February, 2021
30
October, 2019
28
June, 2019
26
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
481
bigWig
476
bam
280
fastq
264
bed narrowPeak
169
tsv
101
zippedFastqFolder
100
tagAlign
78
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
865
Homo sapiens
Biosample type
2365
tissue
865
primary cell
660
cell line
391
in vitro differentiated cells
10
stem cell
Organ
318
epithelium
272
pancreas
31
vasculature
29
connective tissue
27
blood vessel
24
kidney
20
vein
13
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
421
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
502
hg19
406
GRCh38
Lab
386
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
single cell RNA-seq
organ_slims!
eye
pericardium
BIOSAMPLE
ASSAY
865 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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