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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
906
ChIP-seq
260
ATAC-seq
DNase-seq
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1047
Transcription
906
DNA binding
282
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
627
histone modification
626
histone
323
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
282
August, 2017
237
October, 2019
193
May, 2020
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
23
October, 2017
17
November, 2018
12
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1724
bam
1589
bigWig
966
tsv
807
bed narrowPeak
384
bigBed narrowPeak
361
fastq
238
tagAlign
144
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
tagAlign bed3+
Organism
2399
Homo sapiens
Biosample type
2407
tissue
870
primary cell
660
cell line
391
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
492
pancreas
486
adipose tissue
356
liver
237
brain
193
heart
167
kidney
158
bone element
122
blood vessel
122
vasculature
86
limb
67
artery
53
eye
49
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2376
AMP
31
T1D
Genome assembly (visualization)
1675
GRCh38
1587
hg19
Lab
2132
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
single cell RNA-seq
files.file_type!
tagAlign bed3+
organ_slims!
lung
BIOSAMPLE
ASSAY
2407 results
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total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
4
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
3
1
1
1
1
kidney
49
27
75
6
1
1
1
bone element
84
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