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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
907
ChIP-seq
222
ATAC-seq
single cell RNA-seq
DNase-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1021
Transcription
907
DNA binding
253
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
282
August, 2017
238
October, 2019
193
May, 2020
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
17
November, 2018
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1700
bam
1569
bigWig
967
tsv
769
bed narrowPeak
384
bigBed narrowPeak
337
fastq
238
tagAlign
137
txt
64
xls
37
bed broadPeak
28
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2344
Homo sapiens
Biosample type
2353
tissue
768
primary cell
660
cell line
391
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
486
adipose tissue
468
pancreas
316
liver
238
brain
193
heart
167
kidney
158
bone element
122
blood vessel
122
vasculature
86
limb
67
artery
53
eye
48
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2312
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1676
GRCh38
1548
hg19
Lab
2132
AMP-T2D consortium
131
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
single cell RNA-seq
month_released!
May, 2022
organ_slims!
pericardium
BIOSAMPLE
ASSAY
2353 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
286
71
50
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
3
1
1
1
1
kidney
49
27
75
6
1
1
1
bone element
84
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