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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
DNase-seq
5
total RNA-seq
4
small RNA-seq
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
196
DNA binding
9
Transcription
3
DNA accessibility
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
27
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
28
May, 2019
10
July, 2019
9
October, 2017
Available data
208
bam
187
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
23
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
208
Homo sapiens
Biosample type
199
tissue
9
primary cell
Organ
676
liver
601
pancreas
580
connective tissue
440
adipose tissue
230
epithelium
208
brain
181
heart
174
vasculature
171
blood vessel
98
artery
78
limb
66
bone element
65
kidney
60
blood
60
bodily fluid
40
nerve
36
embryo
24
musculature of body
23
spleen
18
vein
8
skeleton
3
eye
1
pericardium
1
pituitary gland
Project
208
AMP
Genome assembly (visualization)
180
GRCh38
130
hg19
Lab
208
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
DNase-seq
single cell RNA-seq
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
brain
13
1
caudate nucleus
14
+ See 65 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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