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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
9
RRBS
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
254
DNA binding
200
DNA accessibility
57
DNA methylation
9
3D chromatin structure
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
34
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
44
August, 2017
43
April, 2018
31
June, 2019
29
July, 2019
27
October, 2019
21
February, 2021
7
August, 2020
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
570
bam
381
fastq
265
tsv
262
bed narrowPeak
132
zippedFastqFolder
96
tagAlign
80
bigBed narrowPeak
bed broadPeak
21
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
968
Homo sapiens
Biosample type
2177
tissue
968
primary cell
378
in vitro differentiated cells
259
cell line
10
stem cell
Organ
382
epithelium
346
pancreas
33
connective tissue
25
vasculature
24
kidney
23
blood vessel
18
vein
13
musculature of body
liver
10
brain
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
495
AMP
276
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
574
hg19
482
GRCh38
Lab
460
AMP-T2D consortium
276
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
snATAC-seq
files.file_type!
bed broadPeak
organ_slims!
liver
BIOSAMPLE
ASSAY
968 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
33
4
2
1
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