Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
724
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
29
pCHi-C
snATAC-seq
27
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1229
Transcription
724
DNA binding
264
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
253
August, 2017
223
August, 2021
211
October, 2019
170
May, 2020
120
July, 2018
93
February, 2023
93
May, 2019
77
July, 2019
70
November, 2017
66
April, 2019
65
May, 2022
47
September, 2023
45
October, 2018
44
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
38
December, 2017
25
February, 2020
20
October, 2017
15
May, 2023
14
November, 2018
9
April, 2020
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
3
January, 2018
2
March, 2023
2
November, 2020
Available data
1598
bigWig
1565
bam
1080
tsv
809
bed narrowPeak
384
bigBed narrowPeak
303
fastq
186
tagAlign
156
txt
64
xls
37
bed broadPeak
27
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2384
Homo sapiens
Biosample type
2384
tissue
966
primary cell
577
cell line
356
in vitro differentiated cells
9
stem cell
Organ
522
connective tissue
462
adipose tissue
458
pancreas
311
liver
270
heart
219
kidney
213
brain
158
bone element
112
blood vessel
112
vasculature
69
limb
62
artery
53
eye
45
musculature of body
30
nerve
16
skeleton
16
spleen
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2314
AMP
47
KPMP
21
T1D
9
LungMap
2
community
Genome assembly (visualization)
1681
GRCh38
1592
hg19
1
hg18
Lab
2067
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
snATAC-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
2393 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
58
68
6
4
3
1
1
2
adipose tissue
382
1
3
1
3
liver
167
102
20
1
1
3
1
1
1
kidney
49
21
75
64
1
1
1
bone element
84
+ See 159 more…
stem cell
hESC
2
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download