Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
967
total RNA-seq
784
ChIP-seq
DNase-seq
146
ATAC-seq
87
RNA microarray
76
single cell RNA-seq
22
pCHi-C
snATAC-seq
19
WGBS
15
small RNA-seq
12
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1058
Transcription
784
DNA binding
150
DNA accessibility
29
DNA methylation
12
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
230
October, 2019
193
May, 2020
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
65
May, 2022
57
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
23
April, 2019
23
October, 2017
22
February, 2020
17
November, 2018
9
April, 2020
9
August, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
May, 2023
Available data
1625
bam
1465
bigWig
965
tsv
597
bed narrowPeak
367
fastq
323
bigBed narrowPeak
238
tagAlign
99
txt
37
bed broadPeak
28
bed bed3+
18
bed bedMethyl
18
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2141
Homo sapiens
Biosample type
2149
tissue
991
primary cell
594
cell line
392
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
487
pancreas
486
adipose tissue
357
liver
heart
238
brain
158
bone element
128
blood vessel
128
vasculature
89
kidney
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2072
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1504
hg19
1443
GRCh38
Lab
1999
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
snATAC-seq
lab.title!
Katalin Susztak, Upenn
organ_slims!
heart
BIOSAMPLE
ASSAY
2149 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
4
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
1
3
1
1
1
bone element
84
kidney
27
53
1
1
+ See 144 more…
See all biosamples
Download