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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
98
bam
81
bigWig
70
bed narrowPeak
58
tsv
21
bigBed narrowPeak
6
tagAlign
Organism
137
Homo sapiens
Biosample type
69
tissue
66
cell line
2
primary cell
Organ
927
pancreas
784
liver
669
connective tissue
505
epithelium
489
adipose tissue
363
heart
267
kidney
253
brain
225
vasculature
221
blood vessel
155
bone element
137
artery
86
limb
62
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
37
embryo
spleen
20
vein
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
137
AMP-T2D consortium
assay_title!
DNase-seq
snATAC-seq
files.file_type!
bed bed3
organ_slims!
spleen
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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