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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
Assay category
251
DNA binding
Target of assay
284
histone
284
histone modification
251
transcription factor
179
narrow histone mark
110
control
105
broad histone mark
73
recombinant protein
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
244
November, 2017
64
November, 2018
47
August, 2017
42
December, 2017
28
December, 2018
16
May, 2021
15
October, 2018
14
January, 2019
11
August, 2021
7
October, 2019
6
April, 2019
5
February, 2021
5
May, 2019
5
May, 2024
4
June, 2019
1
November, 2019
Available data
250
bam
247
bigWig
244
fastq
243
bed narrowPeak
236
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
3
tar
Organism
251
Homo sapiens
Biosample type
248
cell line
3
primary cell
Organ
241
liver
7
kidney
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
251
AMP
Genome assembly (visualization)
245
hg19
211
GRCh38
Lab
251
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
snATAC-seq
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
cell line
HepG2
241
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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