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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
270
DNA binding
257
DNA accessibility
186
Transcription
57
DNA methylation
7
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
57
August, 2017
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
31
June, 2019
28
October, 2019
12
February, 2023
11
July, 2019
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
418
bam
417
bigWig
279
fastq
260
bed narrowPeak
153
zippedFastqFolder
117
tsv
100
tagAlign
74
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
5
bed bed3+
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
794
Homo sapiens
Biosample type
1299
tissue
794
primary cell
547
cell line
214
in vitro differentiated cells
7
stem cell
Organ
295
epithelium
265
pancreas
29
vasculature
25
blood vessel
23
connective tissue
20
vein
18
kidney
brain
12
musculature of body
8
blood
8
bodily fluid
7
liver
6
heart
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
453
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
438
hg19
350
GRCh38
Lab
420
AMP-T2D consortium
232
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
total RNA-seq
month_released!
December, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
794 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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