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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
219
DNA binding
7
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
188
histone
188
histone modification
118
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
16
October, 2017
14
July, 2019
2
March, 2020
1
February, 2023
Available data
206
bam
185
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
19
fastq
15
bed broadPeak
9
tsv
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
238
Homo sapiens
Biosample type
222
tissue
16
primary cell
Organ
596
liver
pancreas
374
epithelium
291
heart
237
brain
213
kidney
201
connective tissue
164
vasculature
160
blood vessel
97
bone element
91
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
57
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
180
GRCh38
137
hg19
Lab
238
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
total RNA-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
temporal lobe
15
1
angular gyrus
15
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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