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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
Assay category
119
DNA binding
Target of assay
76
control
40
transcription factor
6
RNA binding protein
3
histone
3
histone modification
2
broad histone mark
2
chromatin remodeller
1
narrow histone mark
1
recombinant protein
Date released
97
November, 2017
10
October, 2019
4
November, 2018
3
February, 2021
3
January, 2019
2
November, 2019
Available data
119
bam
106
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
119
Homo sapiens
Biosample type
204
tissue
119
cell line
82
primary cell
26
in vitro differentiated cells
Organ
98
liver
9
pancreas
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
Project
119
AMP
Genome assembly (visualization)
503
hg19
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assay_title!
DNase-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
cell line
HepG2
98
Panc1
7
GM12878
6
EndoC_BH1
2
smooth muscle cell of the coronary artery
2
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