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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
30
total RNA-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
138
DNA binding
31
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
66
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
185
Homo sapiens
Biosample type
94
tissue
87
cell line
3
primary cell
1
in vitro differentiated cells
Organ
285
pancreas
215
epithelium
185
liver
146
kidney
126
heart
114
connective tissue
93
bone element
67
brain
65
adipose tissue
44
vasculature
42
blood vessel
musculature of body
28
eye
25
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
185
AMP
Genome assembly (visualization)
188
hg19
GRCh38
Lab
148
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
DNase-seq
assembly!
GRCh38
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
185 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
1
3
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
71
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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