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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
1
ATAC-seq
DNase-seq
Assay category
23
DNA binding
1
DNA accessibility
Target of assay
22
histone
22
histone modification
14
broad histone mark
8
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
21
August, 2017
November, 2017
2
October, 2019
1
March, 2019
Available data
319
bam
305
fastq
200
tsv
182
bigWig
161
txt
153
zippedFastqFolder
150
bed narrowPeak
128
tagAlign
24
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
10
bed bed3
10
bigBed narrowPeak
8
csv
7
bed bedgraph
4
hdf5
3
bigBed broadPeak
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
24
Homo sapiens
Biosample type
21
tissue
3
primary cell
Organ
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
connective tissue
Project
24
AMP
Genome assembly (visualization)
45
hg19
GRCh38
Lab
23
AMP-T2D consortium
1
Mark McCarthy, Oxford
assay_title!
DNase-seq
assembly!
GRCh38
month_released!
November, 2017
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
subcutaneous abdominal adipose tissue
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
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