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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ATAC-seq
60
ChIP-seq
47
WGBS
31
total RNA-seq
10
MeRIP-seq
9
snATAC-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
93
DNA accessibility
60
DNA binding
49
DNA methylation
31
Transcription
8
3D chromatin structure
Target of assay
50
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
February, 2023
35
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
80
zippedFastqFolder
76
fastq
67
bam
26
bed narrowPeak
12
bigWig
11
tsv
10
tagAlign
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
254
Homo sapiens
Biosample type
117
primary cell
100
tissue
36
cell line
1
in vitro differentiated cells
Organ
259
liver
254
pancreas
176
epithelium
147
kidney
126
heart
103
connective tissue
85
bone element
68
brain
65
adipose tissue
45
vasculature
43
blood vessel
43
musculature of body
26
limb
24
eye
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
105
HPAP
10
T1D
Genome assembly (visualization)
646
hg19
GRCh38
Lab
105
Klaus Kaestner, Upenn
101
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
4
audit script error
assay_title!
DNase-seq
assembly!
GRCh38
month_released!
February, 2023
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
total RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
22
6
31
15
1
pancreatic beta cell
13
6
16
1
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
25
25
13
4
5
3
1
1
pancreas
2
1
4
1
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
EndoC_BH1
18
2
6
1
2
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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