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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
20
DNA binding
12
Transcription
5
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
68
histone
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
11
May, 2019
10
October, 2019
8
July, 2019
6
August, 2021
4
March, 2020
2
February, 2020
2
November, 2017
Available data
29
bam
14
bigWig
13
tsv
6
bed narrowPeak
4
bigBed narrowPeak
3
hic
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
tar
Organism
43
Homo sapiens
Biosample type
34
tissue
9
primary cell
Organ
787
pancreas
682
liver
597
connective tissue
457
adipose tissue
412
epithelium
heart
243
kidney
159
bone element
154
vasculature
151
blood vessel
117
artery
68
blood
68
bodily fluid
67
brain
54
eye
37
limb
30
musculature of body
24
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
assembly!
hg18
organ_slims!
heart
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
aorta
2
4
1
1
2
1
thoracic aorta
5
2
1
tibial artery
5
1
1
ascending aorta
4
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
2
1
endothelial cell of hepatic sinusoid
1
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