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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
89
total RNA-seq
2
ATAC-seq
DNase-seq
2
WGBS
Assay category
137
DNA binding
89
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
89
histone modification
88
histone
46
transcription factor
44
narrow histone mark
43
broad histone mark
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
542
February, 2021
276
November, 2017
267
May, 2021
230
August, 2017
207
May, 2020
179
October, 2019
131
July, 2018
92
May, 2019
74
July, 2019
70
November, 2018
64
April, 2019
61
December, 2017
45
October, 2018
44
November, 2019
40
May, 2024
38
August, 2021
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
19
June, 2019
16
April, 2018
14
October, 2017
13
March, 2020
12
May, 2023
11
September, 2018
5
November, 2020
2
June, 2018
2
March, 2019
2
September, 2017
1
March, 2023
Available data
230
bam
230
fastq
228
bigWig
99
bed narrowPeak
89
tsv
33
bed bed3+
33
bigBed narrowPeak
18
bed broadPeak
17
tagAlign
12
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
224
Homo sapiens
Biosample type
157
tissue
48
in vitro differentiated cells
25
primary cell
Organ
151
pancreas
64
connective tissue
19
liver
epithelium
16
adipose tissue
Project
230
AMP
Genome assembly (visualization)
255
hg19
230
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
files.file_type!
xls
organ_slims!
epithelium
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
tissue
islet of Langerhans
21
89
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
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in vitro differentiated cells
adipocyte
48
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
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