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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
529
ChIP-seq
DNase-seq
84
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
918
Transcription
529
DNA binding
88
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
179
August, 2017
170
May, 2020
159
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
13
October, 2017
8
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1469
bam
1466
bigWig
918
tsv
578
bed narrowPeak
332
bigBed narrowPeak
266
fastq
105
tagAlign
36
bed broadPeak
28
bed bed3+
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1549
Homo sapiens
Biosample type
1555
tissue
606
primary cell
528
cell line
296
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
390
pancreas
245
liver
126
brain
88
heart
70
bone element
65
blood vessel
65
vasculature
60
limb
29
nerve
28
musculature of body
27
eye
25
kidney
23
artery
13
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1553
AMP
2
T1D
Genome assembly (visualization)
1682
GRCh38
1555
hg19
Lab
1550
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
month_released!
May, 2022
BIOSAMPLE
ASSAY
1555 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
24
2
1
6
1
liver
147
83
1
1
1
bone tissue
58
heart left ventricle
3
29
2
1
1
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