Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
32
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
35
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
Available data
44
bam
22
bed narrowPeak
21
bigWig
14
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
52
Homo sapiens
Biosample type
52
tissue
Organ
824
pancreas
730
liver
614
connective tissue
457
adipose tissue
445
epithelium
306
heart
251
kidney
183
brain
179
vasculature
175
blood vessel
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
42
musculature of body
32
embryo
25
nerve
20
lung
20
spleen
16
skeleton
10
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
52
AMP-T2D consortium
assay_title!
DNase-seq
audit.ERROR.category!
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
52 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
19
1
5
tibial artery
9
1
1
gastrocnemius medialis
1
4
muscle of leg
3
1
distal epiphysis of femur
1
+ See 6 more…
See all biosamples
Download