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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
155
total RNA-seq
151
ATAC-seq
99
single cell RNA-seq
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
256
Transcription
247
DNA binding
160
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
73
September, 2018
48
July, 2018
44
August, 2017
43
April, 2018
28
July, 2019
26
October, 2019
23
June, 2019
12
February, 2023
8
January, 2021
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
564
bigWig
548
bam
266
bed narrowPeak
261
tsv
223
fastq
98
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
697
Homo sapiens
Biosample type
2403
tissue
697
primary cell
577
cell line
354
in vitro differentiated cells
9
stem cell
Organ
214
epithelium
182
pancreas
30
connective tissue
26
vasculature
23
blood vessel
21
kidney
17
vein
11
liver
11
musculature of body
10
brain
8
blood
8
bodily fluid
8
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
492
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
592
hg19
496
GRCh38
Lab
460
AMP-T2D consortium
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
audit.ERROR.category!
audit script error
award.project!
HPAP
target.investigated_as!
control
BIOSAMPLE
ASSAY
697 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
CD8-positive, alpha-beta T cell
30
4
2
1
pancreatic beta cell
7
10
7
12
pancreatic alpha cell
7
10
6
12
pancreatic ductal cell
13
4
4
10
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