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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
Assay category
39
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
6
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
35
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
63
Homo sapiens
Biosample type
50
tissue
13
primary cell
Organ
933
pancreas
785
liver
675
connective tissue
499
epithelium
489
adipose tissue
363
heart
266
kidney
254
brain
224
vasculature
220
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
19
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
39
hg19
20
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
audit script error
assay_title!
DNase-seq
audit.ERROR.category!
audit script error
month_released!
June, 2018
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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