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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
66
Transcription
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
24
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
March, 2020
Available data
149
bam
122
bigWig
107
bed narrowPeak
67
tsv
57
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
195
Homo sapiens
Biosample type
128
tissue
66
cell line
1
primary cell
Organ
803
pancreas
771
liver
640
connective tissue
476
adipose tissue
epithelium
358
heart
251
kidney
247
brain
225
vasculature
221
blood vessel
137
artery
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
30
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
195
AMP
Genome assembly (visualization)
165
GRCh38
130
hg19
Lab
195
AMP-T2D consortium
assay_title!
DNase-seq
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
ascending aorta
16
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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