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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
total RNA-seq
8
ATAC-seq
7
ChIP-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
89
Transcription
8
DNA accessibility
7
DNA binding
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
18
February, 2021
5
February, 2023
5
March, 2020
5
November, 2019
4
December, 2017
October, 2019
2
December, 2019
Available data
97
bam
91
bigWig
88
tsv
11
bed narrowPeak
4
bedpe bed3+
4
fastq
3
tagAlign
2
bed bed3+
hic
2
ibed
1
bed bedgraph
1
txt
Organism
107
Homo sapiens
Biosample type
107
in vitro differentiated cells
88
tissue
78
cell line
49
primary cell
1
stem cell
Organ
6
embryo
5
epithelium
4
connective tissue
Project
107
AMP
Genome assembly (visualization)
100
hg19
95
GRCh38
Lab
106
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
files.file_type!
hic
month_released!
October, 2019
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
18
cardiomyocytes (cardiac muscle cell)
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
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