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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
DNase-seq
1
FAIRE-seq
Assay category
257
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
May, 2021
396
November, 2017
367
August, 2017
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
80
April, 2019
76
November, 2018
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
245
fastq
239
bam
229
bigWig
137
bed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
38
bigBed narrowPeak
19
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
360
Homo sapiens
Biosample type
260
tissue
62
in vitro differentiated cells
45
primary cell
Organ
165
pancreas
107
connective tissue
53
liver
45
adipose tissue
29
epithelium
26
musculature of body
Project
367
AMP
Genome assembly (visualization)
233
hg19
208
GRCh38
Lab
367
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2018
May, 2021
BIOSAMPLE
ASSAY
367 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
62
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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