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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
440
bam
423
bigWig
401
tsv
fastq
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
444
tissue
2
primary cell
Organ
576
connective tissue
469
pancreas
446
adipose tissue
363
heart
323
liver
273
kidney
248
epithelium
235
brain
219
vasculature
218
blood vessel
159
bone element
137
artery
86
limb
61
musculature of body
57
eye
41
nerve
20
lung
20
vein
16
skeleton
10
embryo
9
blood
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
446
AMP
Genome assembly (visualization)
404
hg19
400
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNase-seq
audit.WARNING.category!
inconsistent assembly
files.file_type!
fastq
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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