Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
836
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
26
WGBS
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1222
Transcription
836
DNA binding
284
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
573
histone modification
572
histone
306
narrow histone mark
266
broad histone mark
171
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
277
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
73
October, 2018
72
July, 2019
66
May, 2022
49
December, 2017
47
September, 2023
44
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
23
October, 2017
22
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1647
bam
1535
bigWig
1073
tsv
745
bed narrowPeak
363
fastq
330
bigBed narrowPeak
238
tagAlign
157
txt
64
xls
37
bed broadPeak
30
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2504
Homo sapiens
Biosample type
2507
tissue
1052
primary cell
634
cell line
376
in vitro differentiated cells
8
stem cell
Organ
546
connective tissue
493
pancreas
486
adipose tissue
356
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2416
AMP
47
KPMP
31
T1D
19
LungMap
2
community
Genome assembly (visualization)
1617
GRCh38
1529
hg19
1
hg18
Lab
2161
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
audit.WARNING.category!
inconsistent control read length
organ_slims!
limb
BIOSAMPLE
ASSAY
2515 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
70
68
6
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
144
20
1
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
+ See 149 more…
stem cell
SB Ad3.1
1
1
hESC
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download