Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
66
ChIP-seq
Assay category
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
51
November, 2017
13
August, 2017
2
October, 2019
Available data
3127
bam
2899
bigWig
1600
tsv
1550
bed narrowPeak
1290
fastq
802
bigBed narrowPeak
387
tagAlign
158
txt
153
zippedFastqFolder
103
bed broadPeak
66
bigBed broadPeak
64
xls
57
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
66
Homo sapiens
Biosample type
45
cell line
21
primary cell
Organ
45
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
66
AMP
Genome assembly (visualization)
66
hg19
51
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
audit.WARNING.category!
inconsistent control read length
files.file_type!
tar
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
66 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
45
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
Download