Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
189
total RNA-seq
23
ATAC-seq
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
526
DNA binding
193
Transcription
23
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
323
transcription factor
108
control
92
histone modification
91
histone
81
recombinant protein
55
narrow histone mark
52
RNA binding protein
36
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
294
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
45
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
8
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
649
bam
590
bigWig
435
fastq
411
bed narrowPeak
328
bigBed narrowPeak
174
tsv
75
tagAlign
45
bed broadPeak
45
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
759
Homo sapiens
Biosample type
375
cell line
357
tissue
15
in vitro differentiated cells
12
primary cell
Organ
929
pancreas
758
liver
665
connective tissue
500
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
759
AMP
Genome assembly (visualization)
593
hg19
503
GRCh38
Lab
688
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
audit.WARNING.category!
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
759 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
352
14
1
1
2
2
2
1
tissue
liver
144
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
islet of Langerhans
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
Download