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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
26
transcription factor
22
histone
22
histone modification
14
chromatin remodeller
12
broad histone mark
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
22
November, 2017
11
December, 2017
8
August, 2017
5
November, 2018
2
February, 2018
Available data
48
bam
48
bigWig
48
fastq
46
bed narrowPeak
27
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
48
Homo sapiens
Biosample type
27
cell line
17
in vitro differentiated cells
2
stem cell
1
primary cell
1
tissue
Organ
28
liver
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
48
AMP
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
47
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_title!
DNase-seq
files.file_type!
hdf5
organ_slims!
pancreas
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
cell line
HepG2
27
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
tissue
liver
1
See all biosamples
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