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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
81
total RNA-seq
80
ATAC-seq
DNase-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
1
RRBS
1
WGBS
Assay category
83
Transcription
82
DNA binding
80
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
54
histone
54
histone modification
34
broad histone mark
22
control
20
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
86
October, 2019
72
February, 2021
66
February, 2023
12
May, 2019
9
July, 2019
5
February, 2020
3
June, 2019
2
August, 2021
Available data
155
bam
136
bed narrowPeak
119
bigWig
69
tsv
53
bigBed narrowPeak
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
255
Homo sapiens
Biosample type
183
tissue
66
cell line
6
primary cell
Organ
904
pancreas
785
liver
674
connective tissue
501
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
158
bone element
137
artery
86
limb
63
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
255
AMP
Genome assembly (visualization)
167
GRCh38
160
hg19
Lab
255
AMP-T2D consortium
assay_title!
DNase-seq
award.project!
T1D
BIOSAMPLE
ASSAY
255 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
tissue
coronary artery
5
1
36
tibial nerve
35
5
1
tibial artery
23
1
1
islet of Langerhans
3
14
1
4
retina
3
15
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
retinal pigment epithelial cell
3
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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