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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
908
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
GRO-seq
Assay category
1218
Transcription
908
DNA binding
290
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
628
histone modification
627
histone
323
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
51
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
1
August, 2022
Available data
1724
bam
1587
bigWig
1048
tsv
807
bed narrowPeak
384
bigBed narrowPeak
371
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
32
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2554
Homo sapiens
Biosample type
2559
tissue
1056
primary cell
647
cell line
385
in vitro differentiated cells
4
stem cell
Organ
544
connective tissue
489
pancreas
485
adipose tissue
354
liver
279
heart
236
brain
231
kidney
158
bone element
125
blood vessel
125
vasculature
86
limb
69
artery
53
eye
45
musculature of body
41
nerve
23
spleen
19
lung
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2470
AMP
47
KPMP
27
T1D
19
LungMap
community
Genome assembly (visualization)
1676
GRCh38
1579
hg19
1
hg18
Lab
2211
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
award.project!
community
month_released!
March, 2020
BIOSAMPLE
ASSAY
2563 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
GRO-seq
tissue
islet of Langerhans
290
69
66
6
7
1
3
4
1
4
adipose tissue
382
2
3
3
liver
166
145
20
1
3
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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stem cell
hESC
3
1
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