Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
195
DNA binding
161
Transcription
152
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
57
August, 2017
55
May, 2021
48
July, 2018
43
April, 2018
31
June, 2019
30
October, 2019
29
July, 2019
12
February, 2023
9
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
398
bam
392
bigWig
239
fastq
182
bed narrowPeak
166
tsv
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
526
Homo sapiens
Biosample type
2433
tissue
583
cell line
526
primary cell
393
in vitro differentiated cells
8
stem cell
Organ
236
epithelium
194
pancreas
32
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
4
eye
2
adipose tissue
artery
1
pericardium
Project
526
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
421
hg19
316
GRCh38
Lab
491
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
organ_slims!
artery
BIOSAMPLE
ASSAY
526 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
+ See 76 more…
See all biosamples
Download