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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ATAC-seq
77
total RNA-seq
40
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
4
MeRIP-seq
3
Hi-C
Assay category
124
DNA accessibility
88
Transcription
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
130
August, 2021
64
May, 2022
40
May, 2024
14
May, 2023
5
March, 2019
4
November, 2020
1
May, 2021
1
October, 2017
Available data
142
bed narrowPeak
64
xls
63
txt
61
bigWig
26
fastq
25
bam
2
bed broadPeak
2
hic
1
bedpe
1
bedpe bed3+
1
tsv
Organism
259
Homo sapiens
Biosample type
259
tissue
54
in vitro differentiated cells
40
cell line
35
primary cell
Organ
142
kidney
40
heart
40
liver
37
pancreas
Project
259
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
118
GRCh38
43
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
DNase-seq
lab.title!
AMP-T2D consortium
month_released!
August, 2017
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
tissue
kidney
75
49
11
6
1
left cardiac atrium
40
liver
20
20
islet of Langerhans
23
7
4
2
pancreas
1
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